katielink commited on
Commit
d32f7b5
1 Parent(s): 539be96

Update app.py

Browse files
Files changed (2) hide show
  1. README.md +1 -1
  2. app.py +8 -5
README.md CHANGED
@@ -1,5 +1,5 @@
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  ---
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- title: Glioma Segmentation
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  emoji: 🧠
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  colorFrom: indigo
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  colorTo: red
 
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  ---
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+ title: Brain Tumor Segmentation
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  emoji: 🧠
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  colorFrom: indigo
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  colorTo: red
app.py CHANGED
@@ -16,7 +16,9 @@ from monai.transforms import (
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  BUNDLE_NAME = 'spleen_ct_segmentation_v0.1.0'
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  BUNDLE_PATH = os.path.join(torch.hub.get_dir(), 'bundle', BUNDLE_NAME)
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- #examples = ['examples/BRATS_485.nii.gz']
 
 
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  model, _, _ = bundle.load(
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  name = BUNDLE_NAME,
@@ -69,7 +71,7 @@ def predict(input_file, z_axis, model=model, device=device):
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  #pred_2_image = pred_image[0, 1, :, :, z_axis]
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  #pred_3_image = pred_image[0, 2, :, :, z_axis]
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- return input_t1c_image, pred_1_image
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  iface = gr.Interface(
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  fn=predict,
@@ -79,9 +81,10 @@ iface = gr.Interface(
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  ],
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  outputs=[
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  gr.Image(label='input image'),
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- gr.Image(label='segmentation')],
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- title='Segment Gliomas using MONAI',
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- #examples=examples,
 
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  )
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  iface.launch()
 
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  BUNDLE_NAME = 'spleen_ct_segmentation_v0.1.0'
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  BUNDLE_PATH = os.path.join(torch.hub.get_dir(), 'bundle', BUNDLE_NAME)
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+ examples = [
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+ ['examples/BRATS_485.nii.gz'],
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+ ]
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  model, _, _ = bundle.load(
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  name = BUNDLE_NAME,
 
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  #pred_2_image = pred_image[0, 1, :, :, z_axis]
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  #pred_3_image = pred_image[0, 2, :, :, z_axis]
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+ return input_t1c_image, pred_1_image, z_axis
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  iface = gr.Interface(
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  fn=predict,
 
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  ],
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  outputs=[
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  gr.Image(label='input image'),
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+ gr.Image(label='segmentation'),
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+ gr.Slider(0, 200, label='z-axis', value=100)],
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+ title='Segment Brain Tumors using MONAI',
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+ examples=examples,
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  )
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  iface.launch()