model_config.json

{
    "pdf_processing": {
        "extract_images": false,
        "infer_table_structure": true,
        "strategy": "fast",
        "chunking_strategy": "by_title",
        "model_name": "yolox",
        "max_characters": 10000,
        "combine_text_under_n_chars": 100
      },
    "allowed_extensions": "pdf",
    "embeddings": "huggingface",
    "embeddings_model": "BAAI/bge-small-en-v1.5",
    "llm_model": "gpt-4-1106-preview",
    "model_temp": 0.2,
    "max_tokens": 512,
    "context_window": 5000,
    "UPLOAD_FOLDER": "../path/to/upload/folder",
    "GPT_PROMPT_PATH": "data/prompts/prompt_gpt.txt",
    "MISTRAL_PROMPT_PATH": "data/prompts/prompt_mistral.txt",
    "INFO_PROMPT_PATH": "data/prompts/prompt_info.txt",
    "peer_review_journals_path": "data/prompts/peer_review_journals.txt",
    "eq_network_journals_path": "data/prompts/eq_network_journals.txt",
    "queries": ["Does the article share any data or code? Look for terms related to supplementary materials or reproducibility.",
      "Has the study or any data in the article been registered in advance?",
      "Does the article adhere to specific reporting guidelines such as ISRCTN, CONSORT, PRISMA, MOOSE, STARD, ARRIVE, STROBE, SPIRIT, CARE, AGREE, SRQR, SQUIRE, MDAR, REMARK?",
      "Is the article's methodology described in detail, including where, when, how, what, and who?",
      "Are the data collection processes described in detail, including where, when, how, what, and who?",
      "Does the article provide a detailed description of the sample, including size, demographics, recruitment, and criteria?",
      "Does the article describe the data analysis process in detail?",
      "Does the article discuss measures taken to avoid or minimize systematic bias?",
      "Has the article been published in a journal?"],
    "criteria": [
        "Data and code sharing.",
        "Has anything in the article been registered (in advance)?",
        "Does the article follow any reporting guidelines?",
        "Description of methodology",
        "Data collection processes",
        "Sample description. eg. size, demographics, recruitment, in-/exclusion criteria",
        "Data analysis process",
        "Measures to minimize systematic bias",
        "Peer Review"],
    "journal_query": "Is the given research paper published in any of the following journals: {}?",
    "author_query": "Give me details about the institutions (like university or hospital) and contact details (eg. email) of the corresponding author.",
    "title_query": "Output title of the paper."
}